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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
34
ChIP-seq
4
DNase-seq
2
pCHi-C
2
single cell RNA-seq
Assay category
58
Transcription
49
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
1
May, 2021
Available data
102
bam
85
bigWig
74
bed narrowPeak
59
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
143
Homo sapiens
Biosample type
75
tissue
66
cell line
2
primary cell
Organ
583
connective tissue
465
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
265
brain
261
epithelium
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
142
AMP
1
T1D
Genome assembly (visualization)
128
GRCh38
93
hg19
Lab
142
AMP-T2D consortium
1
Kyle Gaulton, UCSD
files.file_type!
fastq
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
143 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
pCHi-C
single cell RNA-seq
tissue
coronary artery
1
36
5
2
tibial artery
1
1
23
2
pulmonary artery
2
thymus
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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