Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
total RNA-seq
68
ChIP-seq
43
ATAC-seq
5
DNase-seq
5
single cell RNA-seq
4
Hi-C
2
Capture-C
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
1
snATAC-seq
Assay category
219
Transcription
68
DNA binding
49
DNA accessibility
4
3D chromatin structure
2
DNA methylation
Target of assay
50
histone
50
histone modification
26
broad histone mark
24
narrow histone mark
17
control
1
RNA binding protein
1
transcription factor
Date released
118
July, 2018
57
May, 2021
55
November, 2019
26
February, 2021
20
August, 2017
18
October, 2019
16
October, 2018
14
March, 2020
6
July, 2019
5
April, 2018
4
June, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
1
February, 2023
Available data
661
bam
610
bigWig
410
tsv
fastq
194
bed narrowPeak
91
bigBed narrowPeak
29
bed bed3+
19
bed broadPeak
16
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
3
bedpe bed3+
3
hic
1
hdf5
Organism
345
Homo sapiens
Biosample type
255
tissue
86
cell line
5
primary cell
in vitro differentiated cells
Organ
540
connective tissue
447
adipose tissue
352
heart
346
pancreas
265
brain
255
liver
230
vasculature
227
blood vessel
173
epithelium
163
kidney
158
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
338
AMP
8
T1D
Genome assembly (visualization)
287
hg19
274
GRCh38
Lab
346
AMP-T2D consortium
83
Klaus Kaestner, Upenn
27
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
70
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
fastq
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
346 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
Capture-C
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
snATAC-seq
tissue
islet of Langerhans
175
22
24
1
1
1
endocrine pancreas
16
body of pancreas
3
2
2
2
pancreas
1
2
1
1
1
cell line
EndoC_BH1
33
15
19
1
2
1
Panc1
13
1
1
primary cell
pancreatic acinar cell
3
pancreatic ductal cell
1
pancreatic stellate cell
1
Download