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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
total RNA-seq
22
ATAC-seq
20
ChIP-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
Assay category
111
Transcription
22
DNA accessibility
20
DNA binding
4
3D chromatin structure
Target of assay
13
histone
13
histone modification
8
broad histone mark
5
narrow histone mark
4
transcription factor
3
control
Date released
85
May, 2021
August, 2021
26
February, 2021
14
August, 2017
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
Available data
254
bam
229
bigWig
fastq
124
tsv
105
bed narrowPeak
23
bed bed3+
20
tagAlign
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
161
Homo sapiens
Biosample type
1975
tissue
280
primary cell
178
cell line
161
in vitro differentiated cells
4
stem cell
Organ
38
connective tissue
5
epithelium
3
pancreas
2
embryo
1
heart
Project
161
AMP
Genome assembly (visualization)
138
hg19
117
GRCh38
Lab
161
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
files.file_type!
fastq
month_released!
August, 2021
BIOSAMPLE
ASSAY
161 results
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total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
7
14
cardiac precursors (cardiac muscle cell)
19
1
1
cardiomyocytes (cardiac muscle cell)
3
1
2
2
2
induced pluripotent stem cell
9
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