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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
59
total RNA-seq
18
ChIP-seq
11
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
82
DNA accessibility
74
Transcription
18
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
164
August, 2021
14
May, 2023
4
March, 2023
2
March, 2019
Available data
78
bed narrowPeak
64
xls
57
txt
14
bigWig
10
tsv
3
hic
2
bedpe bed3+
1
bedpe
1
vcf
Organism
180
Homo sapiens
Biosample type
146
tissue
36
cell line
2
stem cell
Organ
144
kidney
31
liver
4
pancreas
Project
180
AMP
4
community
Genome assembly (visualization)
76
GRCh38
18
hg19
Lab
2749
AMP-T2D consortium
319
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
184 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
tissue
kidney
75
49
11
6
1
islet of Langerhans
1
1
2
cell line
HepG2
9
18
2
1
1
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
stem cell
SB Ad3.1
1
1
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