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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
ATAC-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
5
DNA accessibility
4
Transcription
Date released
4
August, 2021
4
March, 2023
3
February, 2023
Available data
5
bigWig
4
bed narrowPeak
3
bed bedgraph
3
txt
2
bed bed3+
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
2
cell line
2
stem cell
Organ
4
connective tissue
Project
7
AMP
4
community
Genome assembly (visualization)
7
hg19
Lab
2749
AMP-T2D consortium
319
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
11 results
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ATAC-seq
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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