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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
6
Hi-C
6
total RNA-seq
3
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
39
DNA binding
DNA accessibility
9
Transcription
6
3D chromatin structure
4
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
24
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
May, 2022
Available data
34
bigWig
27
bed narrowPeak
24
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
fastq
2
hic
Organism
59
Homo sapiens
Biosample type
46
tissue
13
primary cell
Organ
553
connective tissue
442
adipose tissue
363
pancreas
316
heart
301
liver
231
brain
191
kidney
176
epithelium
172
vasculature
171
blood vessel
147
bone element
92
artery
78
limb
59
musculature of body
40
nerve
29
eye
19
vein
10
embryo
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
36
hg19
20
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
files.file_type!
fastq
month_released!
April, 2020
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
2
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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