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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1290
total RNA-seq
859
ChIP-seq
470
ATAC-seq
235
single cell RNA-seq
198
DNase-seq
87
RNA microarray
57
snATAC-seq
56
pCHi-C
53
WGBS
33
Hi-C
18
small RNA-seq
15
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
53
DNA methylation
Date released
41
May, 2022
12
July, 2019
August, 2017
Available data
41
zippedFastqFolder
16
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
fastq
6
tsv
Organism
53
Homo sapiens
Biosample type
41
primary cell
12
tissue
Organ
41
epithelium
41
pancreas
8
heart
2
blood vessel
2
vasculature
1
limb
1
liver
1
musculature of body
Project
41
HPAP
12
AMP
Genome assembly (visualization)
8
GRCh38
Lab
41
Klaus Kaestner, Upenn
12
AMP-T2D consortium
files.file_type!
fastq
month_released!
August, 2017
BIOSAMPLE
ASSAY
53 results
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WGBS
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
heart left ventricle
4
aorta
2
heart right ventricle
2
heart
1
muscle of leg
1
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