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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
934
total RNA-seq
532
ChIP-seq
231
ATAC-seq
174
single cell RNA-seq
168
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
17
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1124
Transcription
532
DNA binding
429
DNA accessibility
25
DNA methylation
16
3D chromatin structure
Target of assay
430
histone
430
histone modification
248
narrow histone mark
182
broad histone mark
98
control
6
transcription factor
4
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
118
July, 2018
May, 2019
109
August, 2017
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
47
September, 2023
42
May, 2022
40
March, 2020
40
May, 2021
40
November, 2019
25
February, 2020
19
April, 2020
16
October, 2018
15
May, 2023
8
January, 2021
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1792
bam
1639
bigWig
1076
tsv
851
bed narrowPeak
468
bigBed narrowPeak
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2243
Homo sapiens
Biosample type
2245
tissue
674
primary cell
253
in vitro differentiated cells
235
cell line
6
stem cell
Organ
504
connective tissue
445
adipose tissue
299
kidney
290
pancreas
278
liver
252
heart
225
brain
158
bone element
115
limb
83
blood vessel
83
vasculature
73
musculature of body
68
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
2148
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1447
GRCh38
1368
hg19
Lab
1959
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
91
inconsistent ontology term
9
audit script error
files.file_type!
fastq
month_released!
May, 2019
BIOSAMPLE
ASSAY
2245 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
195
43
48
7
4
3
1
4
liver
167
78
20
1
1
2
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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