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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
934
total RNA-seq
671
ChIP-seq
231
ATAC-seq
174
single cell RNA-seq
168
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
17
WGBS
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1124
Transcription
671
DNA binding
429
DNA accessibility
25
DNA methylation
3D chromatin structure
Target of assay
540
histone
540
histone modification
290
narrow histone mark
250
broad histone mark
118
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
241
October, 2019
227
August, 2021
193
May, 2020
163
June, 2019
118
July, 2018
115
May, 2019
109
August, 2017
95
February, 2023
82
November, 2017
80
April, 2019
73
July, 2019
47
September, 2023
42
May, 2022
40
May, 2021
40
May, 2024
39
November, 2019
33
March, 2020
25
February, 2020
19
April, 2020
October, 2018
15
May, 2023
8
January, 2021
6
October, 2017
4
November, 2020
3
December, 2019
3
March, 2019
2
January, 2018
1
August, 2022
Available data
1833
bam
1727
bigWig
1076
tsv
939
bed narrowPeak
516
bigBed narrowPeak
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2366
Homo sapiens
Biosample type
2368
tissue
669
primary cell
249
in vitro differentiated cells
232
cell line
6
stem cell
Organ
504
connective tissue
445
adipose tissue
310
heart
298
kidney
277
liver
272
pancreas
253
brain
158
bone element
132
blood vessel
132
vasculature
118
limb
74
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
2271
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1565
GRCh38
1436
hg19
Lab
2045
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
91
inconsistent ontology term
9
audit script error
files.file_type!
fastq
month_released!
October, 2018
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
2368 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
195
43
48
7
4
1
4
liver
167
78
20
1
1
2
1
kidney
49
27
75
64
13
6
1
1
bone element
84
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