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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
5
WGBS
3
ATAC-seq
2
RRBS
1
DNase-seq
1
Hi-C
Assay category
95
DNA binding
7
DNA methylation
4
DNA accessibility
1
3D chromatin structure
Target of assay
76
histone
76
histone modification
48
broad histone mark
28
narrow histone mark
19
control
Date released
647
February, 2021
314
May, 2020
266
May, 2021
213
August, 2021
156
May, 2022
125
October, 2019
118
July, 2018
103
August, 2017
101
July, 2019
64
February, 2023
61
March, 2020
47
September, 2023
25
February, 2020
24
November, 2017
24
November, 2019
23
May, 2019
19
April, 2020
18
September, 2020
16
January, 2021
15
April, 2019
15
May, 2023
14
November, 2020
10
December, 2019
8
June, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
2
October, 2018
1
August, 2022
Available data
fastq
283
bam
272
bigWig
bed narrowPeak
89
tsv
85
tagAlign
42
bed broadPeak
42
bigBed narrowPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
1
bedpe
1
hic
Organism
107
Homo sapiens
Biosample type
93
tissue
14
in vitro differentiated cells
Organ
52
connective tissue
38
adipose tissue
26
liver
18
pancreas
11
musculature of body
Project
107
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
103
AMP-T2D consortium
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
files.file_type!
fastq
bed narrowPeak
BIOSAMPLE
ASSAY
107 results
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Clear Filters
ChIP-seq
WGBS
ATAC-seq
RRBS
DNase-seq
Hi-C
tissue
subcutaneous abdominal adipose tissue
35
3
liver
23
2
islet of Langerhans
14
3
1
skeletal muscle tissue
9
2
right lobe of liver
1
in vitro differentiated cells
adipocyte
14
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