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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
74
total RNA-seq
43
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
180
Transcription
80
DNA accessibility
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
215
February, 2021
200
June, 2019
176
May, 2022
120
May, 2019
118
July, 2018
115
February, 2023
90
July, 2019
82
November, 2017
80
April, 2019
71
August, 2017
62
March, 2020
60
November, 2019
47
September, 2023
23
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
October, 2018
14
May, 2023
10
December, 2019
10
November, 2020
6
October, 2017
5
March, 2023
4
April, 2018
4
March, 2019
4
October, 2022
2
January, 2018
1
August, 2022
Available data
123
tsv
104
bed narrowPeak
64
xls
57
txt
49
bam
45
bigWig
24
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
314
Homo sapiens
Biosample type
228
tissue
44
cell line
38
in vitro differentiated cells
4
primary cell
Organ
130
kidney
92
heart
35
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
314
AMP
Genome assembly (visualization)
105
GRCh38
56
hg19
Lab
150
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
fastq
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
314 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
primary cell
hepatocyte
4
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