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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
pCHi-C
19
ChIP-seq
15
total RNA-seq
10
Hi-C
5
single cell RNA-seq
4
ATAC-seq
Assay category
20
Transcription
19
DNA binding
10
3D chromatin structure
4
DNA accessibility
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
2
control
Date released
670
February, 2021
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
176
May, 2022
129
February, 2023
124
August, 2017
120
May, 2019
118
July, 2018
108
July, 2019
82
November, 2017
80
April, 2019
64
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
141
bam
116
bigWig
fastq
96
tsv
48
bed narrowPeak
45
bigBed narrowPeak
12
bedpe bed3+
10
hic
2
ibed
Organism
85
Homo sapiens
Biosample type
56
tissue
11
cell line
8
in vitro differentiated cells
6
primary cell
4
stem cell
Organ
35
pancreas
10
epithelium
7
heart
5
musculature of body
4
blood vessel
4
vasculature
3
connective tissue
3
liver
2
brain
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
78
AMP
7
T1D
Genome assembly (visualization)
51
hg19
35
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
85 results
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Clear Filters
pCHi-C
ChIP-seq
total RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
tissue
endocrine pancreas
16
islet of Langerhans
2
2
2
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
+ See 17 more…
cell line
EndoC_BH1
1
2
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
primary cell
pancreatic acinar cell
3
endothelial cell of umbilical vein
1
pancreatic ductal cell
1
pancreatic stellate cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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