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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
MeRIP-seq
4
total RNA-seq
3
Hi-C
1
ATAC-seq
1
DNase-seq
1
MPRA
Assay category
4
Transcription
3
3D chromatin structure
2
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
670
February, 2021
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
176
May, 2022
129
February, 2023
124
August, 2017
120
May, 2019
118
July, 2018
108
July, 2019
82
November, 2017
80
April, 2019
64
March, 2020
61
November, 2019
47
September, 2023
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
6
bam
5
bigWig
4
tsv
3
bedpe bed3+
3
cool
3
hic
2
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
txt
Organism
19
Homo sapiens
Biosample type
9
primary cell
7
cell line
4
tissue
Organ
13
pancreas
9
epithelium
6
connective tissue
Project
17
AMP
3
HPAP
Genome assembly (visualization)
9
hg19
6
GRCh38
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
7
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
3
audit script error
files.file_type!
fastq
BIOSAMPLE
ASSAY
20 results
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MeRIP-seq
total RNA-seq
Hi-C
ATAC-seq
DNase-seq
MPRA
primary cell
osteoblast
4
1
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
6
MIN6
1
tissue
islet of Langerhans
4
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