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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
66
ChIP-seq
1
pCHi-C
Assay category
190
Transcription
100
DNA accessibility
66
DNA binding
Target of assay
41
histone
41
histone modification
33
narrow histone mark
25
control
8
broad histone mark
Date released
670
February, 2021
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
176
May, 2022
129
February, 2023
124
August, 2017
120
May, 2019
118
July, 2018
108
July, 2019
82
November, 2017
80
April, 2019
64
March, 2020
61
November, 2019
47
September, 2023
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
359
bam
307
bigWig
191
tsv
72
bed narrowPeak
fastq
50
tagAlign
45
bigBed narrowPeak
Organism
357
Homo sapiens
Biosample type
209
tissue
147
primary cell
1
cell line
Organ
194
liver
16
pancreas
Project
312
AMP
45
T1D
Genome assembly (visualization)
274
hg19
221
GRCh38
Lab
312
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
357 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
endocrine pancreas
16
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
HepG2
1
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