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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
917
total RNA-seq
447
ChIP-seq
228
ATAC-seq
174
single cell RNA-seq
143
DNase-seq
87
RNA microarray
28
snATAC-seq
23
pCHi-C
17
WGBS
16
Hi-C
12
small RNA-seq
7
RRBS
4
MeRIP-seq
3
snDrop-seq
1
FAIRE-seq
Assay category
1103
Transcription
447
DNA binding
400
DNA accessibility
24
DNA methylation
16
3D chromatin structure
Target of assay
342
histone
342
histone modification
174
broad histone mark
168
narrow histone mark
97
control
10
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
193
May, 2020
156
October, 2019
138
June, 2019
118
July, 2018
109
August, 2017
94
February, 2023
87
May, 2019
80
April, 2019
66
July, 2019
47
September, 2023
42
May, 2022
40
May, 2021
40
November, 2019
38
March, 2020
19
April, 2020
16
October, 2018
15
May, 2023
13
February, 2020
8
January, 2021
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1681
bam
1530
bigWig
1053
tsv
752
bed narrowPeak
445
bigBed narrowPeak
fastq
178
bed bed3+
177
bed broadPeak
157
txt
149
bigBed broadPeak
120
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
2105
Homo sapiens
Biosample type
2107
tissue
667
primary cell
253
in vitro differentiated cells
235
cell line
6
stem cell
Organ
504
connective tissue
445
adipose tissue
299
kidney
292
pancreas
278
liver
273
heart
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
2010
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1345
GRCh38
1326
hg19
Lab
1821
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
88
inconsistent ontology term
9
audit script error
files.file_type!
fastq
organ_slims!
brain
BIOSAMPLE
ASSAY
2107 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
195
43
47
7
4
3
1
4
liver
167
78
20
1
1
2
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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