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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
total RNA-seq
78
ChIP-seq
42
ATAC-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
Assay category
121
Transcription
78
DNA binding
42
DNA accessibility
4
3D chromatin structure
Target of assay
47
histone
47
histone modification
25
broad histone mark
22
narrow histone mark
16
transcription factor
15
control
5
RNA binding protein
Date released
130
May, 2021
42
August, 2021
26
February, 2021
16
February, 2023
14
August, 2017
8
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
Available data
263
bam
238
bigWig
125
tsv
118
bed narrowPeak
fastq
40
tagAlign
22
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
251
Homo sapiens
Biosample type
2395
tissue
679
primary cell
251
in vitro differentiated cells
227
cell line
6
stem cell
Organ
42
connective tissue
5
epithelium
3
pancreas
embryo
1
heart
Project
251
AMP
Genome assembly (visualization)
177
hg19
145
GRCh38
Lab
197
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
files.file_type!
fastq
organ_slims!
embryo
gonad
BIOSAMPLE
ASSAY
251 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
6
1
neural progenitor cell
7
21
10
adipocyte
5
14
8
1
cardiac precursors (cardiac muscle cell)
19
1
1
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