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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
DNase-seq
28
ChIP-seq
Assay category
159
DNA accessibility
28
DNA binding
Target of assay
28
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
Date released
155
June, 2019
20
August, 2017
6
November, 2017
5
October, 2019
1
November, 2020
Available data
3278
bam
3038
bigWig
1685
bed narrowPeak
1593
tsv
fastq
958
bigBed narrowPeak
398
tagAlign
286
bed broadPeak
249
bigBed broadPeak
237
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
187
Homo sapiens
Biosample type
157
tissue
29
primary cell
1
cell line
Organ
78
kidney
46
musculature of body
36
brain
limb
30
heart
18
epithelium
18
ureter
13
vasculature
11
blood vessel
11
pancreas
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
liver
2
nerve
Project
187
AMP
Genome assembly (visualization)
164
GRCh38
164
hg19
Lab
187
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
fastq
organ_slims!
limb
BIOSAMPLE
ASSAY
187 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
kidney
13
skeletal muscle tissue
13
brain
12
renal cortex interstitium
11
+ See 36 more…
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 17 more…
cell line
Panc1
1
See all biosamples
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