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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
45
ATAC-seq
34
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
49
DNA accessibility
34
DNA binding
2
Transcription
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
35
February, 2023
26
October, 2019
14
February, 2021
5
May, 2019
2
August, 2021
2
June, 2019
1
July, 2019
Available data
74
bed narrowPeak
48
bam
31
bigWig
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
tsv
Organism
85
Homo sapiens
Biosample type
71
tissue
14
cell line
Organ
321
heart
294
kidney
256
pancreas
248
brain
217
epithelium
169
vasculature
166
blood vessel
142
liver
115
limb
109
connective tissue
97
bone element
88
musculature of body
85
artery
49
adipose tissue
42
eye
38
nerve
22
vein
20
lung
18
ureter
12
skeleton
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
74
GRCh38
39
hg19
Lab
85
AMP-T2D consortium
files.file_type!
fastq
organ_slims!
small intestine
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
85 results
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ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
36
5
2
tibial artery
1
23
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
8
6
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