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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1223
total RNA-seq
875
ChIP-seq
417
ATAC-seq
229
single cell RNA-seq
155
DNase-seq
87
RNA microarray
57
snATAC-seq
55
WGBS
54
pCHi-C
24
Hi-C
18
small RNA-seq
16
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
155
DNA accessibility
Date released
148
June, 2019
4
October, 2019
2
August, 2017
1
November, 2020
Available data
164
bam
164
bed narrowPeak
164
bigBed narrowPeak
164
bigWig
161
bed broadPeak
161
bigBed broadPeak
159
bed bed3+
fastq
Organism
155
Homo sapiens
Biosample type
129
tissue
24
primary cell
2
cell line
Organ
81
kidney
limb
33
musculature of body
30
brain
30
heart
19
epithelium
18
ureter
vasculature
9
blood vessel
7
connective tissue
5
pancreas
4
artery
4
eye
3
liver
2
nerve
2
vein
1
adipose tissue
Project
155
AMP
Genome assembly (visualization)
151
GRCh38
130
hg19
Lab
155
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
organ_slims!
small intestine
limb
vasculature
BIOSAMPLE
ASSAY
155 results
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DNase-seq
tissue
heart
18
kidney
13
brain
12
renal cortex interstitium
11
renal pelvis
10
+ See 29 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
astrocyte of the cerebellum
1
+ See 13 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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