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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
DNase-seq
28
ChIP-seq
Assay category
191
DNA accessibility
28
DNA binding
Target of assay
28
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
Date released
183
June, 2019
20
August, 2017
9
October, 2019
6
November, 2017
1
November, 2020
Available data
3385
bam
3163
bigWig
1784
bed narrowPeak
1594
tsv
fastq
1036
bigBed narrowPeak
398
tagAlign
318
bed broadPeak
281
bigBed broadPeak
269
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
219
Homo sapiens
Biosample type
190
tissue
28
primary cell
1
cell line
Organ
78
kidney
46
musculature of body
36
brain
36
limb
30
heart
18
epithelium
18
ureter
13
vasculature
11
blood vessel
11
pancreas
8
connective tissue
4
artery
eye
4
vein
2
adipose tissue
2
liver
2
nerve
Project
219
AMP
Genome assembly (visualization)
196
GRCh38
196
hg19
Lab
219
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
fastq
organ_slims!
urinary bladder
eye
BIOSAMPLE
ASSAY
219 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
skeletal muscle tissue
13
+ See 41 more…
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 16 more…
cell line
Panc1
1
See all biosamples
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