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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
36
ChIP-seq
4
ATAC-seq
3
small RNA-seq
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
36
DNA binding
5
DNA accessibility
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
386
February, 2021
36
August, 2017
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2019
Available data
440
bam
423
bigWig
401
tsv
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
443
Homo sapiens
Biosample type
442
tissue
2
primary cell
Organ
579
connective tissue
444
adipose tissue
432
pancreas
350
kidney
343
heart
322
liver
263
brain
227
vasculature
225
blood vessel
220
epithelium
159
bone element
141
artery
121
limb
90
musculature of body
60
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
444
AMP
Genome assembly (visualization)
405
hg19
401
GRCh38
Lab
444
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
444 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
3
1
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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