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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
ATAC-seq
3
WGBS
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
Transcription
36
DNA binding
3
DNA methylation
1
DNA accessibility
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
39
August, 2017
1
August, 2021
1
June, 2019
1
March, 2020
Available data
fastq
41
bam
23
bigWig
9
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
41
Homo sapiens
Biosample type
42
tissue
Organ
238
brain
180
heart
154
kidney
153
pancreas
142
epithelium
117
vasculature
116
liver
114
blood vessel
107
limb
85
bone element
84
musculature of body
82
connective tissue
42
adipose tissue
38
artery
37
nerve
22
vein
18
ureter
14
eye
11
lung
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
42
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
42
AMP-T2D consortium
files.file_type!
fastq
assay_slims!
Transcription
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
WGBS
DNase-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
1
omental fat pad
1
subcutaneous adipose tissue
1
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