Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
4
ATAC-seq
3
WGBS
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
Transcription
36
DNA binding
5
DNA accessibility
3
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
39
August, 2017
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2019
1
October, 2019
Available data
44
bam
fastq
27
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
45
Homo sapiens
Biosample type
46
tissue
Organ
249
pancreas
241
brain
229
kidney
227
heart
213
epithelium
163
vasculature
160
blood vessel
138
liver
115
limb
105
connective tissue
97
bone element
85
musculature of body
83
artery
46
adipose tissue
42
eye
38
nerve
22
vein
18
ureter
12
skeleton
11
lung
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
pericardium
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
46
AMP
Genome assembly (visualization)
6
hg19
2
GRCh38
Lab
46
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
assay_slims!
Transcription
organ_slims!
pericardium
BIOSAMPLE
ASSAY
46 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
3
1
adipose tissue(adipose white tissue)
1
omental fat pad
1
subcutaneous adipose tissue
1
Download