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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
3
small RNA-seq
2
ATAC-seq
1
ChIP-seq
1
DNase-seq
Assay category
398
Transcription
3
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
12
July, 2019
1
August, 2017
1
January, 2018
1
June, 2019
1
October, 2019
Available data
442
bam
425
bigWig
401
tsv
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
402
Homo sapiens
Biosample type
400
tissue
2
primary cell
Organ
496
connective tissue
402
adipose tissue
266
pancreas
229
liver
224
heart
204
brain
149
vasculature
147
blood vessel
131
kidney
118
epithelium
91
limb
85
artery
68
musculature of body
58
bone element
31
nerve
18
ureter
15
vein
10
embryo
6
eye
1
blood
1
bodily fluid
1
pericardium
1
pituitary gland
Project
402
AMP
Genome assembly (visualization)
402
hg19
399
GRCh38
Lab
402
AMP-T2D consortium
files.file_type!
fastq
BIOSAMPLE
ASSAY
402 results
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total RNA-seq
small RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
tissue
adipose tissue
381
2
subcutaneous adipose tissue
6
1
omental fat pad
4
1
1
visceral abdominal adipose tissue
3
subcutaneous abdominal adipose tissue
1
primary cell
mesenchymal stem cell of adipose
1
1
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