Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
36
ChIP-seq
3
ATAC-seq
3
WGBS
3
small RNA-seq
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
36
DNA binding
4
DNA accessibility
3
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
386
February, 2021
39
August, 2017
12
July, 2019
2
February, 2020
1
August, 2021
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2019
Available data
442
bam
425
bigWig
401
tsv
fastq
12
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
445
Homo sapiens
Biosample type
444
tissue
2
primary cell
Organ
569
connective tissue
456
pancreas
446
adipose tissue
354
kidney
326
liver
317
heart
264
brain
252
epithelium
195
vasculature
192
blood vessel
151
bone element
122
limb
106
artery
94
musculature of body
43
nerve
30
eye
22
vein
20
lung
18
ureter
10
embryo
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
446
AMP
Genome assembly (visualization)
404
hg19
401
GRCh38
Lab
446
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
month_released!
February, 2023
BIOSAMPLE
ASSAY
446 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
See all biosamples
Download