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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
36
ChIP-seq
4
ATAC-seq
3
WGBS
3
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
36
DNA binding
4
DNA accessibility
3
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
386
February, 2021
39
August, 2017
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2019
Available data
441
bam
424
bigWig
401
tsv
fastq
12
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
5
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bedpe bed3+
1
bigBed broadPeak
Organism
445
Homo sapiens
Biosample type
444
tissue
2
primary cell
Organ
565
connective tissue
471
pancreas
446
adipose tissue
358
heart
324
liver
273
kidney
247
epithelium
235
brain
223
vasculature
222
blood vessel
159
bone element
139
artery
90
limb
54
eye
51
musculature of body
43
nerve
22
vein
20
lung
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
446
AMP
Genome assembly (visualization)
404
hg19
400
GRCh38
Lab
446
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
month_released!
June, 2019
BIOSAMPLE
ASSAY
446 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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