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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
35
ChIP-seq
3
ATAC-seq
3
WGBS
3
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
35
DNA binding
3
DNA accessibility
3
DNA methylation
Target of assay
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
5
control
Date released
386
February, 2021
38
August, 2017
12
July, 2019
2
February, 2020
1
August, 2021
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2019
Available data
442
bam
425
bigWig
401
tsv
fastq
12
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
443
Homo sapiens
Biosample type
442
tissue
2
primary cell
Organ
561
connective tissue
445
pancreas
444
adipose tissue
327
heart
324
liver
276
kidney
234
epithelium
228
brain
182
vasculature
181
blood vessel
151
bone element
102
artery
86
limb
48
musculature of body
41
nerve
26
eye
20
lung
18
vein
10
embryo
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
444
AMP
Genome assembly (visualization)
402
hg19
400
GRCh38
Lab
444
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
bed broadPeak
month_released!
February, 2023
BIOSAMPLE
ASSAY
444 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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