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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
total RNA-seq
75
ChIP-seq
34
DNase-seq
6
Hi-C
5
ATAC-seq
5
small RNA-seq
4
WGBS
3
RRBS
2
pCHi-C
1
RNA microarray
1
single cell RNA-seq
1
snATAC-seq
Assay category
410
Transcription
75
DNA binding
40
DNA accessibility
7
DNA methylation
6
3D chromatin structure
Target of assay
64
histone
64
histone modification
40
broad histone mark
24
narrow histone mark
11
control
Date released
386
February, 2021
63
August, 2017
44
June, 2019
22
July, 2019
7
May, 2019
6
March, 2020
4
February, 2020
2
January, 2018
2
May, 2022
1
August, 2021
1
February, 2023
1
May, 2023
1
November, 2019
1
October, 2019
Available data
499
bam
493
bigWig
410
tsv
73
bed narrowPeak
57
bigBed narrowPeak
49
bed broadPeak
fastq
40
bed bed3+
35
bigBed broadPeak
23
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
3
bedpe bed3+
2
hic
1
txt
Organism
540
Homo sapiens
Biosample type
525
tissue
16
primary cell
Organ
583
connective tissue
475
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
541
AMP
Genome assembly (visualization)
476
hg19
454
GRCh38
Lab
541
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
1
audit script error
files.file_type!
fastq
organ_slims!
embryo
BIOSAMPLE
ASSAY
541 results
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total RNA-seq
ChIP-seq
DNase-seq
Hi-C
ATAC-seq
small RNA-seq
WGBS
RRBS
pCHi-C
RNA microarray
single cell RNA-seq
snATAC-seq
tissue
adipose tissue
382
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
1
22
1
1
2
1
1
muscle of leg
7
13
1
muscle of arm
17
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primary cell
skeletal muscle satellite cell
1
8
1
skeletal muscle cell
2
1
1
mesenchymal stem cell of adipose
1
1
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