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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
36
ChIP-seq
3
WGBS
3
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
36
DNA binding
DNA accessibility
3
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
386
February, 2021
39
August, 2017
12
July, 2019
2
February, 2020
1
August, 2021
1
March, 2020
1
May, 2023
Available data
437
bam
419
bigWig
401
tsv
fastq
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
441
Homo sapiens
Biosample type
440
tissue
2
primary cell
Organ
553
connective tissue
442
adipose tissue
363
pancreas
316
heart
301
liver
231
brain
191
kidney
176
epithelium
172
vasculature
171
blood vessel
147
bone element
92
artery
78
limb
59
musculature of body
40
nerve
29
eye
19
vein
10
embryo
10
lung
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
442
AMP
Genome assembly (visualization)
400
hg19
399
GRCh38
Lab
442
AMP-T2D consortium
files.file_type!
fastq
organ_slims!
gonad
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
442 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
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