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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
total RNA-seq
85
RNA microarray
36
ChIP-seq
16
ATAC-seq
3
WGBS
3
small RNA-seq
2
pCHi-C
1
DNase-seq
Assay category
463
Transcription
36
DNA binding
17
DNA accessibility
3
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
536
February, 2021
39
August, 2017
12
July, 2019
9
February, 2023
2
February, 2020
1
August, 2021
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2019
1
October, 2019
Available data
508
bam
483
bigWig
459
tsv
88
txt
fastq
21
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
4
bed bed3
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
605
Homo sapiens
Biosample type
603
tissue
3
primary cell
Organ
583
connective tissue
475
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
605
AMP
1
T1D
Genome assembly (visualization)
475
hg19
467
GRCh38
Lab
605
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
files.file_type!
fastq
organ_slims!
gonad
BIOSAMPLE
ASSAY
606 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
DNase-seq
tissue
adipose tissue
382
3
1
bone element
84
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
megakaryocyte
1
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