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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
36
ChIP-seq
4
ATAC-seq
3
WGBS
3
small RNA-seq
1
DNase-seq
1
RNA microarray
Assay category
401
Transcription
36
DNA binding
5
DNA accessibility
3
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
386
February, 2021
39
August, 2017
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
March, 2020
1
May, 2023
1
November, 2019
1
October, 2019
Available data
442
bam
425
bigWig
400
tsv
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
445
Homo sapiens
Biosample type
444
tissue
2
primary cell
Organ
581
connective tissue
461
pancreas
446
adipose tissue
386
heart
kidney
323
liver
263
brain
261
epithelium
226
vasculature
223
blood vessel
159
bone element
141
artery
122
limb
89
musculature of body
61
eye
43
nerve
21
vein
19
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
446
AMP
Genome assembly (visualization)
405
hg19
401
GRCh38
Lab
446
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
organ_slims!
kidney
month_released!
March, 2020
BIOSAMPLE
ASSAY
446 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
3
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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