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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
35
ChIP-seq
4
ATAC-seq
3
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
35
DNA binding
4
DNA accessibility
3
DNA methylation
Target of assay
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
5
control
Date released
386
February, 2021
38
August, 2017
12
July, 2019
2
February, 2020
2
March, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2023
1
November, 2019
1
October, 2019
Available data
442
bam
425
bigWig
402
tsv
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
445
Homo sapiens
Biosample type
444
tissue
2
primary cell
Organ
575
connective tissue
464
pancreas
445
adipose tissue
363
heart
324
liver
276
kidney
249
epithelium
229
brain
217
vasculature
216
blood vessel
159
bone element
137
artery
86
limb
57
eye
48
musculature of body
41
nerve
20
lung
18
vein
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
446
AMP
Genome assembly (visualization)
403
hg19
400
GRCh38
Lab
446
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
bed broadPeak
BIOSAMPLE
ASSAY
446 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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