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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
53
ChIP-seq
4
ATAC-seq
3
DNase-seq
3
WGBS
3
small RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RNA microarray
Assay category
401
Transcription
53
DNA binding
8
DNA accessibility
3
DNA methylation
2
3D chromatin structure
Target of assay
46
histone
46
histone modification
29
broad histone mark
17
narrow histone mark
7
control
Date released
386
February, 2021
39
August, 2017
22
October, 2019
12
July, 2019
3
March, 2020
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2019
Available data
462
bam
440
bigWig
402
tsv
fastq
26
bed narrowPeak
23
bigBed narrowPeak
8
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
tar
Organism
469
Homo sapiens
Biosample type
446
tissue
24
primary cell
Organ
583
connective tissue
475
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
470
AMP
Genome assembly (visualization)
422
hg19
413
GRCh38
Lab
470
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
470 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RNA microarray
tissue
adipose tissue
382
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
1
visceral abdominal adipose tissue
3
+ See 2 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
mesenchymal stem cell of adipose
1
1
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