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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
45
ATAC-seq
25
ChIP-seq
4
DNase-seq
Assay category
54
Transcription
49
DNA accessibility
25
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
35
February, 2023
21
October, 2019
3
July, 2019
3
May, 2019
2
June, 2019
Available data
93
bam
85
bigWig
74
bed narrowPeak
54
tsv
25
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
Organism
128
Homo sapiens
Biosample type
64
cell line
62
tissue
2
primary cell
Organ
491
connective tissue
401
adipose tissue
278
pancreas
226
heart
205
kidney
202
brain
188
liver
187
vasculature
185
blood vessel
128
artery
113
epithelium
96
limb
66
bone element
53
musculature of body
31
nerve
18
ureter
12
vein
10
embryo
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
128
AMP
Genome assembly (visualization)
128
GRCh38
93
hg19
Lab
128
AMP-T2D consortium
files.file_type!
fastq
BIOSAMPLE
ASSAY
128 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
8
4
tissue
coronary artery
36
3
2
tibial artery
1
18
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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