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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
28
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
49
DNA accessibility
28
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
22
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
96
bam
79
bigWig
68
bed narrowPeak
58
tsv
19
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
135
Homo sapiens
Biosample type
67
tissue
66
cell line
2
primary cell
Organ
563
connective tissue
450
pancreas
436
adipose tissue
353
heart
339
kidney
285
liver
246
epithelium
206
vasculature
203
blood vessel
159
bone element
152
brain
135
artery
107
limb
81
musculature of body
58
eye
35
nerve
20
lung
18
ureter
16
skeleton
16
vein
10
embryo
9
blood
9
bodily fluid
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
135
AMP
Genome assembly (visualization)
122
GRCh38
87
hg19
Lab
135
AMP-T2D consortium
files.file_type!
fastq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
135 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
3
2
tibial artery
1
1
19
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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