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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
4
DNase-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
Assay category
17
DNA binding
5
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
4
July, 2019
2
June, 2019
1
March, 2020
Available data
27
bam
24
bigWig
17
bed narrowPeak
17
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
fastq
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
28
Homo sapiens
Biosample type
133
tissue
66
cell line
28
primary cell
Organ
168
epithelium
88
pancreas
36
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
28
AMP
Genome assembly (visualization)
22
hg19
16
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
fastq
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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