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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
29
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
200
DNA binding
33
DNA accessibility
24
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
177
histone
177
histone modification
113
narrow histone mark
64
broad histone mark
26
control
Date released
86
October, 2019
82
November, 2017
29
June, 2019
28
May, 2019
17
July, 2019
12
February, 2020
6
October, 2017
2
March, 2020
1
February, 2023
Available data
242
bam
220
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
46
bed broadPeak
37
bigBed broadPeak
33
bed bed3+
26
tsv
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
263
Homo sapiens
Biosample type
253
tissue
10
primary cell
Organ
connective tissue
475
pancreas
447
adipose tissue
354
kidney
353
heart
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
263
AMP
Genome assembly (visualization)
201
GRCh38
145
hg19
Lab
263
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
fastq
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
263 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
11
12
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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