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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
28
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
200
DNA binding
32
DNA accessibility
24
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
177
histone
177
histone modification
113
narrow histone mark
64
broad histone mark
26
control
Date released
86
October, 2019
82
November, 2017
28
June, 2019
28
May, 2019
16
July, 2019
12
February, 2020
6
October, 2017
2
March, 2020
1
February, 2023
Available data
235
bam
213
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
118
tagAlign
41
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
26
tsv
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
261
Homo sapiens
Biosample type
253
tissue
8
primary cell
Organ
583
connective tissue
475
pancreas
447
adipose tissue
354
kidney
353
heart
326
liver
267
epithelium
265
brain
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
261
AMP
Genome assembly (visualization)
200
GRCh38
143
hg19
Lab
261
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
fastq
organ_slims!
vasculature
BIOSAMPLE
ASSAY
261 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
11
12
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
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