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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
63
ChIP-seq
23
ATAC-seq
7
DNase-seq
4
pCHi-C
3
WGBS
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
1
single cell RNA-seq
Assay category
63
DNA binding
3
DNA methylation
Target of assay
52
histone
52
histone modification
32
broad histone mark
20
narrow histone mark
10
control
1
RNA binding protein
1
transcription factor
Date released
53
August, 2017
12
June, 2019
1
October, 2019
Available data
104
bam
fastq
77
bigWig
58
bed narrowPeak
22
tagAlign
15
bigBed narrowPeak
11
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
Organism
66
Homo sapiens
Biosample type
40
tissue
14
in vitro differentiated cells
12
primary cell
Organ
200
brain
142
heart
112
pancreas
103
liver
98
blood vessel
98
epithelium
98
vasculature
67
limb
66
connective tissue
52
kidney
40
musculature of body
39
adipose tissue
35
nerve
34
artery
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
66
AMP
Genome assembly (visualization)
10
hg19
9
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
66 results
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Clear Filters
ChIP-seq
WGBS
tissue
subcutaneous abdominal adipose tissue
36
3
islet of Langerhans
1
in vitro differentiated cells
adipocyte
14
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
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