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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ATAC-seq
14
ChIP-seq
9
total RNA-seq
2
Capture-C
Assay category
17
DNA accessibility
14
DNA binding
9
Transcription
Target of assay
12
histone
12
histone modification
8
broad histone mark
4
narrow histone mark
2
control
Date released
14
August, 2017
13
February, 2023
8
February, 2021
4
August, 2021
2
October, 2019
1
May, 2021
Available data
59
bam
57
bigWig
fastq
45
bed narrowPeak
14
tagAlign
13
bed bed3+
5
bed bed3
5
tsv
4
bed bedgraph
3
bigBed narrowPeak
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
42
Homo sapiens
Biosample type
504
tissue
42
in vitro differentiated cells
36
primary cell
1
stem cell
Organ
42
connective tissue
5
epithelium
3
pancreas
2
embryo
1
heart
Project
42
AMP
Genome assembly (visualization)
24
hg19
5
GRCh38
Lab
38
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
42 results
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ATAC-seq
ChIP-seq
total RNA-seq
Capture-C
in vitro differentiated cells
adipocyte
8
14
5
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
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