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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
7
DNase-seq
3
ATAC-seq
Assay category
10
DNA accessibility
9
DNA binding
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
15
June, 2019
3
October, 2019
1
November, 2020
Available data
593
bam
570
bigWig
478
tsv
fastq
75
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
19
Homo sapiens
Biosample type
15
primary cell
2
in vitro differentiated cells
2
tissue
Organ
113
brain
104
kidney
94
heart
84
limb
79
vasculature
77
blood vessel
47
musculature of body
36
epithelium
26
nerve
26
pancreas
25
artery
19
connective tissue
18
ureter
13
vein
6
eye
2
adipose tissue
2
liver
Project
19
AMP
Genome assembly (visualization)
18
hg19
16
GRCh38
Lab
19
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
DNase-seq
ATAC-seq
primary cell
cardiac fibroblast
3
3
mesenchymal stem cell
6
brain pericyte
1
hepatic stellate cell
1
osteoblast
1
in vitro differentiated cells
adipocyte
2
tissue
adipose tissue
1
omental fat pad
1
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