Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
21
ChIP-seq
20
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
DNase-seq
1
Hi-C
1
RRBS
Assay category
34
Transcription
21
DNA accessibility
21
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
14
histone
14
histone modification
8
narrow histone mark
7
control
6
broad histone mark
3
RNA binding protein
3
nucleotide modification
3
transcription factor
Date released
26
February, 2021
22
May, 2021
16
November, 2019
6
November, 2020
5
March, 2020
4
June, 2019
3
May, 2019
2
August, 2021
1
July, 2019
1
October, 2019
Available data
63
bam
57
bigWig
36
tsv
22
bed narrowPeak
5
bigBed narrowPeak
fastq
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
hic
Organism
86
Homo sapiens
Biosample type
76
cell line
9
primary cell
1
in vitro differentiated cells
Organ
86
epithelium
84
bone element
76
pancreas
23
kidney
19
connective tissue
9
musculature of body
6
heart
3
brain
2
embryo
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
82
AMP
4
T1D
Genome assembly (visualization)
58
hg19
54
GRCh38
Lab
80
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
86
inconsistent ontology term
5
audit script error
files.file_type!
fastq
BIOSAMPLE
ASSAY
86 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
DNase-seq
Hi-C
RRBS
cell line
EndoC_BH1
33
15
19
6
2
1
primary cell
epithelial cell of proximal tubule
3
1
1
kidney epithelial cell
3
Liver fetal (hepatocyte)
1
in vitro differentiated cells
intermediate endothelial cell
1
Download