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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
37
DNase-seq
29
ATAC-seq
25
total RNA-seq
6
Hi-C
5
pCHi-C
4
RRBS
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
67
DNA accessibility
44
DNA binding
28
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
7
control
1
RNA binding protein
1
transcription factor
Date released
50
June, 2019
31
February, 2023
24
August, 2017
21
October, 2019
11
July, 2019
7
May, 2019
5
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
93
bed narrowPeak
74
bigWig
64
bam
53
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
14
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
fastq
2
hic
1
txt
Organism
155
Homo sapiens
Biosample type
136
tissue
19
primary cell
Organ
583
connective tissue
475
pancreas
447
adipose tissue
354
kidney
353
heart
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
155
AMP
Genome assembly (visualization)
105
hg19
59
GRCh38
Lab
155
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
fastq
BIOSAMPLE
ASSAY
155 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
2
1
1
1
islet of Langerhans
2
1
14
4
muscle of leg
7
13
1
retina
3
15
3
muscle of arm
17
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primary cell
skeletal muscle satellite cell
8
1
1
retinal pigment epithelial cell
3
1
1
skeletal muscle cell
2
1
1
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