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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
30
total RNA-seq
3
WGBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
51
DNA binding
31
Transcription
3
DNA methylation
1
DNA accessibility
1
DNA sequencing
Target of assay
31
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
Date released
26
August, 2017
24
May, 2020
20
May, 2022
17
August, 2021
1
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
Available data
96
bam
fastq
44
tagAlign
12
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
91
Homo sapiens
Biosample type
73
tissue
17
cell line
1
primary cell
Organ
225
kidney
180
pancreas
165
heart
129
epithelium
118
brain
91
liver
89
bone element
71
blood vessel
71
vasculature
67
connective tissue
48
artery
42
adipose tissue
27
eye
26
limb
23
musculature of body
20
lung
12
nerve
8
blood
8
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
91
AMP
Genome assembly (visualization)
hg19
188
GRCh38
Lab
55
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
files.file_type!
fastq
assembly!
hg19
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
total RNA-seq
WGBS
STARR-seq
pCHi-C
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
46
20
2
1
1
right lobe of liver
1
1
1
cell line
HepG2
4
9
2
1
1
primary cell
hepatocyte
1
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