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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
total RNA-seq
95
ChIP-seq
21
ATAC-seq
3
DNase-seq
3
Hi-C
3
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
187
Transcription
95
DNA binding
24
DNA accessibility
4
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
53
histone
53
histone modification
39
narrow histone mark
31
control
14
broad histone mark
11
transcription factor
1
RNA binding protein
Date released
194
May, 2020
40
May, 2022
35
August, 2021
26
August, 2017
10
July, 2019
October, 2019
5
December, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
February, 2020
Available data
674
bam
616
bigWig
fastq
435
bed narrowPeak
358
bigBed narrowPeak
173
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
319
Homo sapiens
Biosample type
272
tissue
34
cell line
13
primary cell
Organ
579
connective tissue
457
pancreas
446
adipose tissue
345
heart
324
kidney
319
liver
232
epithelium
183
vasculature
180
blood vessel
179
brain
159
bone element
115
artery
94
musculature of body
53
limb
40
eye
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
1
vein
Project
319
AMP
Genome assembly (visualization)
228
hg19
181
GRCh38
Lab
248
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
files.file_type!
fastq
month_released!
October, 2019
BIOSAMPLE
ASSAY
319 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
166
73
20
1
2
1
1
1
right lobe of liver
3
1
1
2
cell line
HepG2
9
18
1
1
2
2
1
primary cell
hepatocyte
5
4
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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