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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
8
snATAC-seq
5
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
35
DNA binding
12
DNA accessibility
5
Transcription
Target of assay
24
histone
24
histone modification
16
broad histone mark
11
control
8
narrow histone mark
Date released
42
October, 2019
8
January, 2021
1
February, 2020
1
January, 2018
1
March, 2020
Available data
102
bam
86
bigWig
81
bed narrowPeak
80
bigBed narrowPeak
fastq
6
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
53
Homo sapiens
Biosample type
44
tissue
8
primary cell
1
cell line
Organ
583
connective tissue
475
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
45
AMP
8
T1D
Genome assembly (visualization)
32
hg19
31
GRCh38
Lab
45
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
snATAC-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
tissue
tibial nerve
35
5
1
2
bladder (urinary bladder)
1
primary cell
peripheral blood mononuclear cell
8
cell line
GM12878
1
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