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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
8
ATAC-seq
6
DNase-seq
4
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
Transcription
23
DNA binding
15
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
4
control
4
transcription factor
Date released
21
October, 2019
14
February, 2021
4
June, 2019
3
July, 2019
1
March, 2020
Available data
44
bam
33
bed narrowPeak
31
bigWig
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
fastq
6
tagAlign
2
hdf5
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
43
Homo sapiens
Biosample type
tissue
29
primary cell
14
cell line
Organ
200
epithelium
145
pancreas
58
connective tissue
45
kidney
43
vasculature
40
blood vessel
34
liver
23
heart
22
vein
14
artery
12
musculature of body
9
blood
9
bodily fluid
9
brain
5
eye
1
bone element
1
bone marrow
1
mammary gland
Project
43
AMP
Genome assembly (visualization)
35
hg19
28
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
fastq
assay_slims!
Transcription
biosample_type!
tissue
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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cell line
smooth muscle cell of the coronary artery
6
8
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