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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
FAIRE-seq
RRBS
1
WGBS
1
pCHi-C
Assay category
25
DNA binding
9
Transcription
5
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
20
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
14
October, 2019
11
May, 2019
6
August, 2021
3
February, 2020
3
July, 2019
3
March, 2020
2
February, 2021
Available data
29
bam
10
tsv
7
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
fastq
2
hdf5
2
tagAlign
1
bed narrowPeak
1
bigBed narrowPeak
1
tar
Organism
42
Homo sapiens
Biosample type
28
tissue
12
primary cell
2
cell line
Organ
195
pancreas
148
epithelium
145
kidney
137
liver
125
heart
93
bone element
91
connective tissue
61
brain
54
eye
46
adipose tissue
42
blood vessel
42
vasculature
38
musculature of body
26
limb
20
lung
13
artery
12
nerve
10
vein
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
42
AMP
Genome assembly (visualization)
GRCh38
158
hg19
Lab
42
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
fastq
assembly!
GRCh38
assay_title!
RRBS
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
FAIRE-seq
WGBS
pCHi-C
tissue
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
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primary cell
endothelial cell of umbilical vein
7
2
1
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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