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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
snATAC-seq
9
single cell RNA-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
DNA binding
13
DNA accessibility
9
Transcription
2
3D chromatin structure
Date released
19
April, 2020
4
October, 2019
2
March, 2020
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
24
Homo sapiens
Biosample type
20
tissue
5
primary cell
Organ
520
connective tissue
411
adipose tissue
404
pancreas
302
kidney
259
heart
226
liver
210
epithelium
159
bone element
134
vasculature
131
blood vessel
107
artery
65
brain
56
eye
56
limb
55
musculature of body
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
19
LungMap
6
AMP
Genome assembly (visualization)
5
hg19
2
GRCh38
Lab
19
Xin Sun, UCSD
6
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
fastq
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
25 results
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snATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
lung
10
9
1
primary cell
endothelial cell of umbilical vein
2
2
1
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