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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
26
ChIP-seq
6
Hi-C
6
total RNA-seq
3
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
26
DNA binding
9
Transcription
6
3D chromatin structure
4
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
narrow histone mark
6
control
Date released
39
June, 2019
17
August, 2017
10
July, 2019
5
March, 2020
5
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
57
bigWig
51
bam
49
bed narrowPeak
41
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
10
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
fastq
2
hic
1
txt
Organism
81
Homo sapiens
Biosample type
71
tissue
10
primary cell
Organ
563
connective tissue
450
pancreas
436
adipose tissue
339
kidney
328
heart
285
liver
246
epithelium
206
vasculature
203
blood vessel
159
bone element
152
brain
135
artery
107
limb
81
musculature of body
58
eye
35
nerve
20
lung
18
ureter
16
skeleton
16
vein
10
embryo
9
blood
9
bodily fluid
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
81
AMP
Genome assembly (visualization)
60
hg19
48
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
files.file_type!
fastq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
81 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
15
1
2
1
1
1
1
muscle of leg
13
5
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
5
1
1
skeletal muscle cell
1
1
1
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